user-k33231a@aalto.fi

Research groups

Multiscale Statistical Physics publications

Preprints (5)

  1. Alcanzare, M. M. T., Karttunen, M., Ala-Nissila, T., Propulsion and controlled steering of magnetic nanohelices, Submitted to Scientific Reports on 7.2.2017, https://arxiv.org/abs/1702.01989
  2. Sarabadani, J., Ikonen, T., Mökkönen, Ala-Nissila, T., Carson, S., and Wanunu, M., Driven translocation of a semi-flexible polymer through a nanopore, Submitted to arXiv: 1612.08590v1 [cond-mat.soft] on 27.12.2016
  3. Tuorila, J., Partanen, M., Ala-Nissilä, T., and Möttönen, M., Efficient protocol for qubit initialization with a tunable environment, Submitted to npj Quantum Information on 13.12.2016, https://arxiv.org/abs/1612.04160
  4. Hirvonen, P., Ervasti, M.M., Fan, Z., Jalalvand, M., Seymour, M., Vaez Allaei, S.M., Provatas, N., Harju, A., Elder, K.R., Ala-Nissila, T., Multiscale modeling of polycrystalline graphene: A comparison of structure and defect energies of realistic samples from phase field crystal models, Submitted to Physical Review B on 12.5.2016, http://arxiv.org/abs/1605.03765
  5. Suomela, S., Kutvonen, A. and Ala-Nissila, T., Quantum jump model for a system with a finite-size environment, Submitted to Physical Review E on 13.1.2016, http://arxiv.org/abs/1601.05317

2017 (2)

  1. Soltani, M., Sarabadani, J., and Zakeri, S.P., Nonmonotonic Casimir interaction: The role of amplifying dielectrics, Physical Review A 95, 023818 (2017). http://journals.aps.org/pra/abstract/10.1103/PhysRevA.95.023818
  2. Alcanzare, M. M. T., Thakore, V., Ollila, S. T. T., Karttunen, M., Ala-Nissila, T., Controlled propulsion and separation of helical particles at the nanoscale, Soft Matter 13, 2148-2154 (2017). http://pubs.rsc.org/-/content/articlehtml/2017/sm/c6sm02437h

2016 (7)

  1. Pekola, J.P., Suomela, S., and Galperin, Y.M., Finite-Size Bath in Qubit Thermodynamics, Journal of Low Temperature Physics 2016, 1-15 (2016).
  2. Kochereshko, V. P., Durnev, M. V., Besombes, L., Mariette, H., Sapega, V. F., Askitopoulos, A., Savenko, I. G., Liew, T. C. H., Shelykh, I. A., Platonov, A. V., Tsintzos, S. I., Hatzopoulos, Z., Savvidis, P. G., Kalevich, V. K., Afanasiev, M. M., Lukoshkin, V. A., Schneider, C., Amthor, M., Metzger, C., Kamp, M., Hoefling, S., Lagoudakis, P., and Kavokin, A., Lasing in Bose-Fermi mixtures, Scientific Reports 6, 20091 (2016). http://www.nature.com/articles/srep20091
  3. Kovalev, V., Savenko, I. G., and Iorsh, I., Ultrafast exciton-polariton scattering towards the Dirac points, Journal of Physics: Condensed Matter 28, 105301 (2016). http://dx.doi.org/10.1088/0953-8984/28/10/105301
  4. Kutvonen, A., Koski, J.V., Ala-Nissila, T., Thermodynamics and efficiency of an autonomous on-chip Maxwell?s demon,, Scientific Reports 6, 21126 (2016). http://dx.doi.org/10.1038/srep21126
  5. Vartia, O.S., Ylä-Oijala, P., Markkanen, J., Puupponen, S., Seppälä, A., Sihvola, A., and Ala-Nissila, T., On the applicability of discrete dipole approximation for plasmonic particles, Journal of Quantitative Spectroscopy & Radiative Transfer 169, pp. 23-35 (2016). http://dx.doi.org/10.1016/j.jqsrt.2015.10.003
  6. Kutvonen, A., Sagawa, T., Ala-Nissila, T., Thermodynamics of information exchange between two coupled quantum dots, Physical Review E 93, 032147 (2016). http://dx.doi.org/10.1103/PhysRevE.93.032147
  7. Alcanzare, M. M. T., Ollila, S. T. T., Thakore, V., Laganapan, A. M., Videcoq, A., Cerbelaud, M., Ferrando, R., Ala-Nissila, T., Shape and scale dependent diffusivity of colloidal nanoclusters and aggregates, The European Physical Journal Special Topics 225, 729?739 (2016).

2015 (25)

  1. Sarabadani, J., Ikonen, T., and Ala-Nissila, T., Theory of polymer translocation through a flickering nanopore under an alternating driving force, The Journal of Chemical Physics 143, 074905 (2015). http://dx.doi.org/10.1063/1.4928743
  2. Sarabadani, J., Ojaghi Dogaheh, B., and Podgornik, R., Repulsive Casimir interaction: Boyer oscillators at nanoscale, Europhysics letters 112, 41001 (2015). http://dx.doi.org/10.1209/0295-5075/112/41001
  3. Jónsson, E., Lehtola, S., and Jónsson, H., Towards an optimal gradient-dependent energy functional of the PZ-SIC form, Procedia Computer Science 51, pp. 1858-1864 (2015). http://dx.doi.org/10.1016/j.procs.2015.05.417
  4. Koski, J.V., Kutvonen, A., Ala-Nissila, T., Pekola J.P., On-chip Maxwell`s demon as an information-powered refrigerator, Physical Review Letters 115, 260602 (2015). http://dx.doi.org/10.1103/PhysRevLett.115.260602
  5. Karpov, D., Savenko I. G., Flayac, H., Rosanov, N. N., Dissipative soliton protocols in semiconductor microcavities at finite temperatures, Physical Review B 92, 075305 (2015). http://dx.doi.org/10.1103/PhysRevB.92.075305
  6. Gudmundsdóttir, H., Jónsson, E. Ö., and H. Jónsson, Calculations of Al dopant in alpha-quartz using a variational implementation of the Perdew-Zunger self-interaction correction, New Journal of Physics 17, 123-127 (2015). http://dx.doi.org/10.1088/1367-2630/17/8/083006
  7. Pedersen, A., Karssemeijer, L.J., Cuppen, H.M., and Jónsson, H., Long-timescale simulations of H2O admolecule diffusion on Ice Ih(0001) surfaces, Journal of Physical Chemistry 119, pp. 16528-16536 (2015). http://dx.doi.org/10.1021/acs.jpcc.5b01629
  8. Bessarab, P.F., Uzdin, V.M., and Jónsson, H., Method for finding mechanism and activation energy of magnetic transitions, applied to skyrmion and antivortex annihilation, Computer Physics Communications 196, pp. 335-347 (2015). http://dx.doi.org/10.1016/j.cpc.2015.07.001
  9. Salles, N., Tétot, R., Ala-Nissila, T., Jónsson, H., Improved tight-binding charge transfer model and calculations of energetics of a step on the rutile TiO2(110) surface, The journal of physical chemistry C 119, 10391-10399 (2015). http://pubs.acs.org/doi/abs/10.1021/acs.jpcc.5b01580
  10. Berthier, F., Maras, E. and Legrand, B., Phase diagrams of nanoalloys: influence of size and morphology, Physical Chemistry Chemical Physics 1, 1 (2015). http://dx.doi.org/10.1039/C5CP01593F
  11. Schmidt, R., Carusela, M.F., Pekola, J.P., Suomela, S., and Ankerhold, J., Work and heat for two-level systems in dissipative environments: Strong driving and non-Markovian dynamics, Physical Review B 91, 224303 (2015). http://link.aps.org/doi/10.1103/PhysRevB.91.224303
  12. Viisanen, K.L., Suomela, S., Gasparinetti, S., Saira, O-P., Ankerhold, J., and Pekola, J.P., Incomplete measurement of work in a dissipative two level system, New Journal of Physics 17, 055014 (2015). http://iopscience.iop.org/1367-2630/17/5/055014/
  13. Maras, E., Salles, N., Tétot, R., Ala-Nissila, T. and Jonsson, H, Improved tight-binding charge transfer model and calculations of energetics of a step on rutile TiO2(110) surface, Journal of Physical Chemistry 119, 10391-10399 (2015). http://dx.doi.org/10.1021/acs.jpcc.5b01580
  14. Flayac, H., Savenko, I., Möttönen, M., Ala-Nissila, T., Quantum treatment of the Bose-Einstein condensation in non-equilibrium systems, Physical Review B 92, 115117 (2015). http://dx.doi.org/10.1103/PhysRevB.92.115117
  15. Mökkönen, H., Ikonen, T., Ala-Nissilä, T., and Jónsson, H., Transition State Theory Approach to Polymer Escape from a One Dimensional Potential Well, Journal of Chemical Physics 142, 123-127 (2015). http://dx.doi.org/10.1063/1.4921959
  16. Buyukdagli, S., Blossey, R., and Ala-Nissila, T., Ionic current inversion in pressure-driven polymer translocation through nanopores, Physical Review Letters 114, 088303 (2015). http://dx.doi.org/10.1103/PhysRevLett.114.088303
  17. Melander, M., Laasonen, K., Jonsson, H., Removing external degrees of freedom from transition state search methods using quaternions, Journal of Chemical Theory and Computation 11, 1055-1062 (2015). http://pubs.acs.org/doi/abs/10.1021/ct501155k
  18. Seppala, A; Vartia, O; Seppala, P; Saari, K; Noponen, T; Ala-Nissila, T, Virtual enclosure model for thermal radiation extinction inside porous materials with closed cell structure, International Journal of Heat and Mass Transfer 87, pp. 79-91 (2015). http://dx.doi.org/10.1016/j.ijheatmasstransfer.2015.03.074
  19. Puupponen, S., Seppälä, A., Vartia, O., Saari, K., and Ala-Nissila, T., Preparation of Paraffin and Fatty Acid Nanofluids for Heat Transfer Applications, Thermochimica Acta 601, 33 (2015). http://dx.doi.org/10.1016/j.tca.2014.12.020
  20. Laganapan, AMK; Videcoq, A; Bienia, M; Ala-Nissila, T; Bochicchio, D; Ferrando, R, Computation of shear viscosity of colloidal suspensions by SRD-MD, Journal of Chemical Physics 142, pp. 144101 (2015). http://dx.doi.org/10.1063/1.4917039
  21. Melander, M; Laasonen, K; Jonsson, H, Removing External Degrees of Freedom from Transition-State Search Methods using Quaternions, Journal of Chemical Theory and Computation 11, pp. 1055-1062 (2015). http://dx.doi.org/10.1021/ct501155k
  22. Saarinen, S., Puupponen, S., Meriläinen, A., Joneidi, A., Seppälä, A., Saari, K., and Ala-Nissila, T., Turbulent heat transfer characteristics and thermal properties of n-decane-in-water nanoemulsion fluids and micelles-in-water fluids, International Jornal of Heat and Mass Transfer 81, 246 (2015). http://dx.doi.org/10.1016/j.ijheatmasstransfer.2014.10.029
  23. Suomela, S., Salmilehto, J., Savenko, I., Ala-Nissila, T., and Möttönen, M., Fluctuations of work in nearly adiabatically driven open quantum systems, Physical Review E 91, 022126 (2015). http://link.aps.org/doi/10.1103/PhysRevE.91.022126
  24. Li, H., Li, L, Pedersen, A., Gao, Y., Khetrapal, N., Jonsson, H., Zeng, X.C., Magic-number gold nanoclusters with diameter 1 to 3.5 nm: Relative stability and catalytic activity for CO oxidation, Nano Letters 15, 682-688 (2015). http://pubs.acs.org/doi/abs/10.1021/nl504192u
  25. Kutvonen, A., Ala-Nissila T., Pekola J.P., Entropy production in a non-Markovian environment, Physical Review E 92, 012107 (2015). http://dx.doi.org/10.1103/PhysRevE.92.012107

2014 (14)

  1. Buyukdagli, S., and Ala-Nissila, T., Controlling polymer translocation and ion transport via charge correlations, Langmuir 30, 12907 (2014). http://dx.doi.org/10.1021/la503327j
  2. Palyulin, V.V., Ala-Nissila, T., and Metzler, R., Polymer translocation: the first two decades and the recent diversification, Soft Matter 10, 9016 (2014). http://dx.doi.org/10.1039/C4SM01819B
  3. Laaksonen, K., Li, S.-Y., Puisto, S.R., Rostedt, N.K.J., Ala-Nissila, T., Granqvist, C.G., Nieminen, R., and Niklasson, G.A., Nanoparticles of TiO2 and VO2 in dielectric media: Conditions for low optical scattering, and comparison between effective medium and four-flux theories, Solar Energy Materials and Solar Cells 130, 132 (2014). http://dx.doi.org/10.1016/j.solmat.2014.06.036
  4. Sarabadani, J., Ikonen, T., and Ala-Nissila, T., Iso-Flux Tension Propagation Theory of Driven Polymer Translocation: The Role of Initial Configurations, The Journal of Chemical Physics 141, 214907-1-9 (2014). http://dx.doi.org/10.1063/1.4903176
  5. Suomela, S., Solinas, P., Pekola, J.P., Ankerhold, J., and Ala-Nissila, T., Moments of work in the two-point measurement protocol for a driven open quantum system, Physical Review B 90, 094304 (8 pages) (2014). http://dx.doi.org/10.1103/PhysRevB.90.094304
  6. Manneschi, C., Fanzio, P., Ala-Nissila, T., Angeli, E., Repetto, L., Firpo, G., and Valbusa, U., Stretching of DNA confined in nanochannels with charged walls, Biomicrofluidics 8, 064121 (2014). http://dx.doi.org/10.1063/1.4904008
  7. Fischer, J., Savenko, I.G., Fraser, M. D., Holzinger, S., Brodbeck, S., Kamp, M., Shelykh, I. A., Schneider, C., and Höfling, S., Spatial Coherence Properties of One Dimensional Exciton-Polariton Condensates, Physical Review Letters 113, 203902 (2014). http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.113.203902
  8. Heinonen, V., Achim, C.V., Elder, K.R., Buyuddagli,S., and Ala-Nissila, T., Phase-field-crystal models and mechanical equilibrium, Physical Review E 89, 032411 (2014). http://dx.doi.org/10.1103/PhysRevE.89.032411
  9. Ollila, S.T.T., Denniston, C., Karttunen, M., and Ala-Nissila, T., Biopolymer Filtration in Corrugated Nanochannels, Physical Review Letters 112, 118301 (2014). http://journals.aps.org/prl/abstract/10.1103/PhysRevLett.112.118301
  10. Buyukdagli, S., and Ala-Nissila, T., Electrostatic correlations on the ionic selectivity of cylindrical membrane nanopores, Journal of Chemical Physics 140, 067401 (2014). http://dx.doi.org/10.1063/1.4864323
  11. Laaksonen, K., Suomela, S., Puisto, S.R., Rostedt, N.K.J., Ala-Nissila, T., and Nieminen, R.M., Influence of high-refractive-index oxide cores on optical properties of thin metal nanoshells, Journal of the Optical Society of America B 31, 494 (2014). http://dx.doi.org/10.1364/JOSAB.31.000494
  12. Harri Mökkönen, Timo Ikonen, Hannes Jónsson, Tapio Ala-Nissila, Polymer escape from a confining potential, Journal of Chemical Physics 140, 054907 (2014). http://scitation.aip.org/content/aip/journal/jcp/140/5/10.1063/1.4863920
  13. Lehtola, S. and Jónsson, H., Pipek−Mezey Orbital Localization Using Various Partial Charge Estimates, Journal of Chemical Theory and Computation 10, 642-649 (2014). http://pubs.acs.org/doi/abs/10.1021/ct401016x
  14. Sarabadani, J., Milchev, A., and Vilgis, T. A., Structure and dynamics of polymer melt confined between two solid surfaces: A molecular dynamics study, The Journal of Chemical Physics 141, 044907-1_044907-13 (2014). http://scitation.aip.org/content/aip/journal/jcp/141/4/10.1063/1.4890820

2013 (21)

  1. Laaksonen, K., Li, S.-Y., Puisto, S.R., Niklasson, G.A., Ala-Nissila, T., and Nieminen, R.M., Optical Properties of Thermochromic VO2 Nanoparticles, Nano-Optics for Enhancing Light-Matter Interactions on a Molecular Scale, NATO Science for Peace and Security Series B: Physics and Biophysics 1, 419 (2013).
  2. Tomilov, A., Videcoq, A., Cerbelaud, M., Piechowiak, M.A., Chartier, T., Ala-Nissila, T., Bochicchio, D., and Ferrando, R., Aggregation in Colloidal Suspensions: Evaluation of the Role of Hydrodynamic Interactions by Means of Numerical Simulations, The Journal of Physical Chemistry B 117, 14509 (2013). http://pubs.acs.org/doi/suppl/10.1021/jp407247y
  3. Lehtola, S.; Jónsson, H., Unitary optimization of localized molecular orbitals, Journal of Chemical Theory and Computation 9, 5365-5372 (2013). http://pubs.acs.org/doi/abs/10.1021/ct400793q
  4. Granato, E., Ying, S.C., Elder, K.R., and Ala-Nissila, T., Anomalous fast dynamics of adsorbate overlayers near an incommensurate structural transition, Physical Review Letters 111, 126102 (2013). http://prl.aps.org/abstract/PRL/v111/i12/e126102
  5. N. Samadashvili, B. Reischl, T. Hynninen, T. Ala-Nissila and A. S. Foster, Atomistic simulations of friction at an ice-ice interface, Friction 1, 242 (2013). http://dx.doi.org/10.1007/s40544-013-0021-3
  6. Denniston, C., MacKay, F.E., and Ollila, S. T. T., Coupling Molecular Dynamics to a "Continuum" Mesh Background, Publication Series of the John von Neumann Institute for Computing (NIC), NIC Series 46, 232 (2013). http://juser.fz-juelich.de/record/132949
  7. Elder, K.R., Rossi, G., Kanerva, P., Sanches, F., Ying, S-C., Granato, E., Achim, C.V., and Ala-Nissila, T., Modeling Self-Organization of Thin Strained Metallic Overlayers from Atomic to Micron Scales, Physical Review B 88, 075423 (2013). http://dx.doi.org/10.1103/PhysRevB.88.075423
  8. Ikonen, T., Bhattacharya, A., Ala-Nissila, T., and Sung, W., Influence of Pore Friction on the Universal Aspects of Polymer Translocation, Europhysics Letters 103, 38001 (2013). http://iopscience.iop.org/0295-5075/103/3/38001
  9. Manneschi, C., Angeli, E., Ala-Nissila, T., Repetto, L., Firpo, G., and Valbusa, U., Conformations of DNA in triangular nanochannels, Macromolecules 46, 4196 (2013). http://pubs.acs.org/doi/abs/10.1021/ma4000545
  10. Meriläinen, A., Seppälä, A., Saari, K., Seitsonen, J., Ruokolainen, J., Puisto, S., Rostedt, N., and Ala-Nissila, T., Influence of particle size and shape on turbulent heat transfer characteristics and pressure losses in water-based nanofluids, International Journal of Heat and Mass Transfer 61, 439 (2013). http://dx.doi.org/10.1016/j.ijheatmasstransfer.2013.02.032
  11. Buyukdagli, S., Ala-Nissila, T., Microscopic formulation of nonlocal electrostatics in polar liquids embedding polarizable ions, Physical Review E 87, 063201 (2013). http://link.aps.org/doi/10.1103/PhysRevE.87.063201
  12. Ollila, S. T. T., Denniston, C., and Ala-Nissila, T., One- and two-particle dynamics in microfluidic T-junctions, Physical Review E Rapid Communications 87, 050302 (2013). http://link.aps.org/doi/10.1103/PhysRevE.87.050302
  13. Sahin Buyukdagli and Tapio Ala-Nissila, Alteration of gas phase ion polarizabilities upon hydration in high dielectric liquids, The Journal of Chemical Physics 139, 044907 (2013). http://scitation.aip.org/content/aip/journal/jcp/139/4/10.1063/1.4816011
  14. Koski, J. V., Sagawa, T., Saira, O.-P., Yoon, Y., Kutvonen, A., Solinas, P., Möttönen, M., Ala-Nissila, T., Pekola, J. P., Distribution of Entropy Production in a Single-Electron Box, Nature Physics 9, 644 (2013). http://www.nature.com/nphys/journal/v9/n10/full/nphys2711.html
  15. Laaksonen, K., Suomela, S., Puisto, S.R., Rostedt, N.K.J., Ala-Nissila, T., Nieminen, R.M., Influence of high-refractive-index oxide coating on optical properties of metal nanoparticles, Journal of the Optical Society of America B 30, 338-348 (2013). http://dx.doi.org/10.1364/JOSAB.30.000338
  16. Heinonen, V., Mijailovic, A., Achim, C.V., Ala-Nissila, T., Rozas, R.E., Horbach, J., Löwen, H., Bcc crystal-fluid interface tension in Yukawa systems, Journal of Chemical Physics 138, 044705 (2013). http://dx.doi.org/10.1063/1.4775744
  17. S. Buyukdagli and T. Ala Nissila, Microscopic formulation of non-local electrostatics in polar liquids embedding polarizable ions, Physical Review E 87, 063201 (2013). http://pre.aps.org/abstract/PRE/v87/i6/e063201
  18. Pekola, J.P., Kutvonen A., Ala-Nissilä T., Dissipated work and fluctuation relations for non-equilibrium single-electron transitions, Journal of Statistical Mechanics: Theory and Experiment 2013, P02033 (2013). http://iopscience.iop.org/1742-5468/2013/02/P02033/article
  19. Ollila, S. T. T., Denniston, C., Karttunen, M., and Ala-Nissila, T., Hydrodynamic Effects on Confined Polymers, Soft Matter 9, pp. 3478-3487 (2013). http://dx.doi.org/10.1039/c3sm27410a
  20. Mackay, F. E., Ollila, S. T. T., and Denniston C., Hydrodynamic forces implemented into LAMMPS through a lattice-Boltzmann fluid, Computer Physics Communications 184, pp. 2021-2031 (2013). http://dx.doi.org/10.1016/j.cpc.2013.03.024
  21. Ollila, S. T. T., Smith, C. J., Ala-Nissila, T., and Denniston, C., The hydrodynamic radius of particles in the hybrid Lattice Boltzmann-Molecular Dynamics method, Multiscale Modeling and Simulation 11, pp. 213-243 (2013). http://dx.doi.org/10.1137/110858756

2012 (16)

  1. Kutvonen A., Rossi G., Puisto S.R., Rostedt N.K., and Ala-Nissila T., Influence of nanoparticle size, loading, and shape on the mechanical properties of polymer nanocomposites, The Journal of Chemical Physics 137, 214901 (2012). http://jcp.aip.org/resource/1/jcpsa6/v137/i21/p214901_s1
  2. Buyukdagli, S., Achim, C., Ala-Nissila, T., Electrostatic correlations in inhomogeneous charged fluids beyond loop expansion, The Journal of Chemical Physics 137, 104902 (2012). http://link.aip.org/link/?JCP/137/104902
  3. Tomilov, A., Videcoq, A., Chartier, T., Ala-Nissila, T., Vattulainen, I., Tracer diffusion in colloidal suspensions under dilute and crowded conditions with hydrodynamic interactions, Journal of Chemical Physics 137, 014503 (2012).
  4. Kutvonen, A., Rossi, G., Rostedt, N.K.J., Puisto, S.R., Ala-Nissila, T., Influence of nanoparticle size, loading and shape on the mechanical properties of polymer nanocomposites, Journal of Chemical Physics 137, 214901 (2012).
  5. Gasparinetti, S., Solinas, P., Yoon, Y. and Pekola, J. P., Single Cooper-pair pumping in the adiabatic limit and beyond, Physical Review B Rapid Communications 86, 5 (2012). http://arxiv.org/abs/1206.0193
  6. Ikonen, T., Bhattacharya, A., Ala-Nissila, T. and Sung, W., Influence of non-universal effects on dynamical scaling in driven polymer translocation, The Journal of Chemical Physics 137, 214901 (2012).
  7. Kutvonen, A., Rossi, G., and Ala-Nissila, T., Correlations between mechanical, structural, and dynamical properties of polymer nanocomposites, Physical Review E 85, 041803 (2012).
  8. Buyukdagli, S. and Ala-Nissila, T., Dipolar depletion effect on the differential capacitance of carbon-based materials, Europhysics Letters 98, 60003 (2012). http://iopscience.iop.org/0295-5075/98/6/60003
  9. Buyukdagli, S. and Ala-Nissila, T., Excluded volume effects in macromolecular forces and ion-interface interactions, Journal of Chemical Physics 136, 074901 (2012). http://jcp.aip.org/resource/1/jcpsa6/v136/i7/p074901_s1
  10. Rossi, G., Elliott, I.G., Ala-Nissila, T., and Faller, R., Molecular Dynamics Study of a MARTINI Coarse-Grained Polystyrene Brush in a Good Solvent: Structure and Dynamics, Macromolecules 45, 563 (2012). http://pubs.acs.org/doi/abs/10.1021/ma201980k
  11. Laurila, T., Carlson, A., Do-Quang, M., Ala-Nissila, T., and Amberg, G., Thermohydrodynamics of boiling in a van der Waals fluid, Physical Review E 85, 026320 (2012).
  12. Elder, K.R., Rossi, G., Kanerva. P., Sanches, F., Ying, S-C., Granato, E., Achim, C.V., and Ala-Nissila, T., Patterning of heteroepitaxial overlayers from nano to micron scales, Physical Review Letters 108, 226102 (2012). http://prl.aps.org/abstract/PRL/v108/i22/e226102
  13. Ikonen, T., Shin, J., Ala-Nissila, T., and Sung, W., Polymer translocation under time-dependent driving forces: resonant activation induced by attractive polymer-pore interactions, The Journal of Chemical Physics 136, 205104 (2012). http://jcp.aip.org/resource/1/jcpsa6/v136/i20/p205104_s1
  14. Ollila, S. T. T., Ala-Nissila, T., and Denniston, C., Hydrodynamic forces on steady and oscillating porous particles, Journal of Fluid Mechanics 709, pp. 123-148 (2012). http://journals.cambridge.org/abstract_S0022112012003254
  15. Hynninen, T., Dias, C.L., Mkrtchyan, A., Heinonen, V., Karttunen, M., Foster, A.S., Ala-Nissila, T., A molecular dynamics implementation of the 3D Mercedes-Benz water model, Computer Physics Communications 183, 363 (2012). http://www.sciencedirect.com/science/article/pii/S0010465511003262
  16. Ikonen, T., Bhattacharya, A., Ala-Nissila, T. and Sung, W., Unifying model of driven polymer translocation, Physical Review E 85, 051803 (2012). http://pre.aps.org/abstract/PRE/v85/i5/e051803

2011 (10)

  1. Buyukdagli, S., Achim, C., Ala-Nissila, T., Ion size effects at ionic exclusion from dielectric interfaces and slit nanopores, Journal of Statistical Mechanics: Theory and Experiments No. 2011, P05033 (2011). http://iopscience.iop.org/1742-5468/2011/05/P05033
  2. Granato, E., Ramos, J.A.P., Achim, C.V., Lehikoinen, J., Ying, S.C., Ala-Nissila, T., Elder, K.R., Glassy phases and driven response of the phase-feld-crystal model with random pinning, Physical Review E 84, 031102 (2011).
  3. Rossi, G., Giannakopoulos, I., Monticelli, L., Rostedt, N.K.J., Puisto, S.R., Lowe, C., Taylor, A.C., Vattulainen, I., Ala-Nissila, T., A MARTINI coarse-grained model of a thermoset polyester coating, Macromolecules 44, 6198-6208 (2011).
  4. Dias, C. L., Hynninen, T., Ala-Nissila, T., Foster, A. S., and Karttunen, M., Hydrophobicity within the three-dimensional Mercedes-Benz model: Potential of mean force,, The Journal of Chemical Physics 134, 065106 (2011). http://link.aip.org/link/?JCP/134/065106
  5. E. Granato, J. A. P. Ramos, C. V. Achim, J. Lehikoinen, S. C. Ying, T. Ala-Nissila, and K. R. Elder, Glassy phases and driven response of the phase-field-crystal model with random pinning, Physical Review E 84, 031102 (2011). http://pre.aps.org/abstract/PRE/v84/i3/e031102
  6. Ikonen, T., Khandkar, M.D., Chen, L.Y., Ying, S.C., and Ala-Nissila, T., Diffusion in periodic potentials with path integral hyperdynamics, Physical Review E 84, 026703 (2011). http://pre.aps.org/abstract/PRE/v84/i2/e026703
  7. Ollila, S. T. T., Denniston, C., Karttunen M. and Ala-Nissila, T., Fluctuating lattice-Boltzmann model for complex fluids, Journal of Chemical Physics 134, 064902 (2011). http://link.aip.org/link/?JCP/134/064902
  8. Lörscher, Christopher, Ala-Nissila, Tapio, and Bhattacharya, Aniket, Polymer translocation induced by a bad solvent, Physical Review E 83, 011914:1-10 (2011).
  9. Cristian Vasile Achim, Raphael Wittkowski, Hartmut Löwen, Stability of liquid crystalline phases in the phase-field-crystal model, Physical Review E 83, 061712 (2011). hhttp://pre.aps.org/abstract/PRE/v83/i6/e061712
  10. Rossi, G., Monticelli, L., Puisto, S. R., Vattulainen, I., and Ala-Nissila, T., Coarse-graining polymers with the MARTINI force field: Polysterene as a benchmark case, Soft Matter 7, 698-708 (2011).

2010 (11)

  1. Jaatinen, A., Ala-Nissila, T., Eighth-order phase-field-crystal model for two-dimensional crystallization, Physical Review E 82, 061602 (2010). http://tfy.tkk.fi/~ala/pdf/Jaatinen,A._EOF-Crystallization_Phys.Rev.E_82,061602(2010).pdf
  2. J. A. P. Ramos, E. Granato, S. C. Ying, C. V. Achim, K. R. Elder, and T. Ala-Nissila, Dynamical transitions and sliding friction of the phase-field-crystal model with pinning, Physical Review E 81, 011121 (2010). http://tfy.tkk.fi/~ala/pdf/Ramos_PRE_81_011121_2010.pdf
  3. Ramos, J.A.P., Granato, E., Ying, S.C., Achim, C.V., Elder, K.R., Ala-Nissila, T., Nonlinear response and dynamical transitions in a phase-field crystal model for adsorbed overlayers, Journal of Physics: Conference Series 246, 012014:1-5 (2010). http://tfy.tkk.fi/~ala/pdf/Ramos,J.A.P._Sliding-friction-in-PFC_J.Phys.Conf.Ser._246,012024(2010).pdf
  4. Shin, J., Ikonen, T., Khandkar, M., Ala-Nissilä, T. and Sung, W., Polymer escape from a metastable Kramers potential: Path integral hyperdynamics study, Journal of Chemical Physics 133, 184902 (2010). http://jcp.aip.org/resource/1/jcpsa6/v133/i18/p184902_s1
  5. Jaatinen, A., Achim, C.V., Elder, K.R., Ala-Nissila, T., Phase field crystal study of symmetric tilt grain boundaries of iron, Technische Mechanik 30, 169-176 (2010). http://www.uni-magdeburg.de/ifme/zeitschrift_tm/2010_Heft1_3/13_Jaatinen_et_al.html
  6. Jaatinen, A. and Ala-Nissila, T., Extended phase diagram of the three-dimensional phase field crystal model, Journal of Physics: Condensed Matter 22, 205402 (4 pp) (2010). http://tfy.tkk.fi/~ala/pdf/Jaatinen,A._Extended-PFC_JPCM22,205402(2010).pdf
  7. Hynninen, T., Heinonen, V., Dias, C.L., Karttunen, M., Foster, A.S., Ala-Nissila, T., Cutting Ice: Nanowire regelation, Physical Review Letters 105, 086102 (2010). http://prl.aps.org/abstract/PRL/v105/i8/e086102
  8. Dias, C.L., Ala-Nissila, T., Wong-ekkabut, J., Vattulainen, I., Grant, M., Karttunen, M., Reply to the comment by Graziano on [The hydrophobic effect and its role in cold denaturation], Cryobiology 60, 356-357 (2010). http://tfy.tkk.fi/~ala/pdf/Dias,C._Reply-to-comment-hydrophobic_Cryobiology60,356(2010).pdf
  9. Jalkanen, J., Rossi, G., Trushin, O., Granato, E., Ala-Nissila, T., Ying, S.C., Stress release mechanisms for Cu on Pd(111) in the submonolayer and monolayer regimes, Physical Review B 81, 041412(R) (2010). http://prb.aps.org/abstract/PRB/v81/i4/e041412
  10. Pitkänen, T., Majaniemi, S., Ala-Nissila, T., Multiscale modelling of microstructure formation in polymer casting, TECHNISCHE MECHANIK 30, 259-268 (2010). http://www.uni-magdeburg.de/ifme/zeitschrift_tm/2010_Heft1_3/22_Pitkanen.pdf
  11. Dias, C.L., Ala-Nissila, T., Wong-ekkabut, J. ,Vattulainen, I., Grant, M., Karttunen, M., The hydrophobic effect and its role in cold denaturation, Cryobiology 60, 91-99 (2010). http://tfy.tkk.fi/~ala/pdf/Dias_Crybiology_2010.pdf

2009 (13)

  1. Luo, K., Ala-Nissila, T., Ying, S.C., and Metzler, R., Driven polymer translocation through nanopores: Slow-vs.-fast dynamics, Europhysics Letters 88, 68006 (2009). http://tfy.tkk.fi/~ala/pdf/Luo_EPL_88_68006_2009.pdf
  2. Jaatinen, A., Achim, C.V., Elder, K., and Ala-Nissila, T., Thermodynamics of bcc metals in phase-field-crystal models, Physical Review B 80, 031602:1-10 (2009). http://tfy.tkk.fi/~ala/pdf/jaatinen_prb_80_031602_2009.pdf
  3. Luo, K., Metzler, R., Ala-Nissila, T., and Ying, S.-C., Polymer translocation out of confined environments, Physical Review E 80, 021907 (2009). http://tfy.tkk.fi/~ala/pdf/Luo_PRE_80_021907_2009.pdf
  4. Dias, C.L., Ala-Nissila, T., Grant, M., and Karttunen, M., Three-dimensional "Mercedes-Benz" model for water, Journal of Chemical Physics 131, 054505 (2009). http://tfy.tkk.fi/~ala/pdf/dias_jcp_131_05405_2009.pdf
  5. Bhattacharya, A., Morrison, W.H., Luo, K., Ala-Nissila, T., Ying, S.-C., Milchev, A., and Binder, K., Scaling exponents of forced polymer translocation through a nanopore, European Physical Journal E 28, 10495 (2009). http://tfy.tkk.fi/~ala/pdf/bhattacharya_epje_28_10495_2009.pdf
  6. Tegze, G., Gránásy, L., Tóth, G.I., Podmaniczky, F., Jaatinen, A., Ala-Nissila, T., and Pusztai, T., Diffusion-Controlled Anisotropic Growth of Stable and Metastable Crystal Polymorphs in the Phase-Field Crystal Model, Physical Review Letters 103, 035702 (2009). http://tfy.tkk.fi/~ala/pdf/tegze_prl_103_035702_2009.pdf
  7. Ollila, S. T. T., Luo, K.F., Ala-Nissila, T., and Ying, S. C., Polymer translocation in a double-force arrangement, European Physical Journal E 28, pp. 385-393 (2009). http://tfy.tkk.fi/~ala/pdf/ollila_epje_28_385_2009.pdf
  8. Narhe, R.D., Khandkar, M.D., Shelke, P.B., Limaye, A.V. and Beysens, D.A., Condensation induced hopping water drops, Physical Review E 80, 031604 (2009). http://tfy.tkk.fi/~ala/pdf/Narhe_PRE_80_031604_2009.pdf
  9. Vehviläinen T., Salo, P., Ala-Nissila, T., and Ying, S.C., Electronic properties of H on vicinal Pt surfaces: First-principles study, Physical Review B 80, 035403 (7 pages) (2009). http://arxiv.org/abs/0903.0288
  10. Trushin, O., Jalkanen, J., Granato, E., Ying, S.C., and Ala-Nissila, T., Atomistic studies of strain relaxation in heteroepitaxial systems, Journal of Physics: Condensed Matter 21, 084211 (2009). http://iopscience.iop.org/0953-8984/21/8/084211/
  11. Ramos, J.A.P., Granato, E., Achim, C.V., Ying, S.C., Elder, K.R., and Ala-Nissila, T., Ordered structures and phase transitions in a phase field crystal model for adsorbed layers, Journal of Computational Interdisciplinary Sciences 1, 95-98 (2009). http://tfy.tkk.fi/~ala/pdf/JCIS_1_95_2009.pdf
  12. Airila, M.I., Ikonen T., Borodin, D., Kirschner, A., Nordlund, K. and Loarte, A., Improvement of surface processes modelling in the ERO code, Journal of Nuclear Materials 390-391, 175-178 (2009).
  13. Achim, C. V. , Ramos, J. A. P., Karttunen, M. , Elder, K. R., Granato, E. , Ala-Nissila, T. and Ying, S. C., Nonlinear driven response of a phase-field crystal in a periodic pinning potential, Physical Review E 79, 011606 (2009). http://tfy.tkk.fi/~ala/pdf/achim_pre_2009.pdf

2008 (15)

  1. Laurila, T., Pradas, M., Hernández-Machado, A., Ala-Nissiä, T., Influence of disorder strength on phase-field models of interfacial growth, Physical Review E (Statistical, Nonlinear, and Soft Matter Physics) 78, 031603/7 pages (2008). http://tfy.tkk.fi/~ala/pdf/PhysRevE_78_031603.pdf
  2. Jalkanen, J., Trushin, O., Elder, K., Granato, E., Ying, S.C., Ala-Nissila, T, Two approaches to dislocation nucleation in the supported heteroepitaxial equilibrium islanding phenomenon, Journal of Physics: Conference Series 100, 072043-072046 (2008). http://www.iop.org/EJ/abstract/1742-6596/100/7/072043
  3. Luo, Kaifu; Ollila, Santtu T. T.; Huopaniemi, Ilkka; Ala-Nissila, Tapio; Pomorski, Pawel; Karttunen, Mikko, Ying, See-Chen; Bhattacharya, Aniket, Dynamical Scaling Exponents for Polymer Translocation through a Nanopore, Physical review E 78, 050901.1-050901.4 (2008). http://tfy.tkk.fi/~ala/pdf/Luo_pre_rc_78_2008.pdf
  4. Jalkanen, J., Trushin, O., Granato, E., Ying, S.C., Ala-Nissila, T, Equilibrium shape and size of supported heteroepitaxial nanoislands, European Physical Journal B 66, 175-183 (2008). http://epjb.edpsciences.org/index.php?option=article&access=standard&Itemid=129&url=/articles/epjb/abs/2008/21/b080405/b080405.html
  5. J.A.P. Ramos, E. Granato, C.V. Achim, S.C. Ying, K.R. Elder and T. Ala-Nissila, Thermal fluctuations and phase diagrams of the phase-field crystal model with pinning, Physical Review E 78, 031109 (2008). http://tfy.tkk.fi/~ala/pdf/PhysRevE_78_031109.pdf
  6. Pirkkalainen, K., Nevalainen, K.A. and Koponen, I.T., Computational methods for mesoscopic modelling of size-selection in nanoisland growth, Journal of Physics: Conference Series 100, 072004 (2008). http://tfy.tkk.fi/~ala/pdf/pirkkalainen_jpconf_2008.pdf
  7. Luo, K., Ala-Nissila, T., Ying, S. C., Bhattacharya, A., Translocation Dynamics with Attractive Nanopore-Polymer Interactions, Physical Review E 78, 061918:1-8 (2008). http://tfy.tkk.fi/~ala/pdf/Luo_pre_78_061918_2008.pdf
  8. Koponen, I.T., and Riekki, K., Cluster growth poised on the edge of break-up: Size distributions with small exponent power-laws, Physica A 387, 2504-2510 (2008). http://tfy.tkk.fi/~ala/pdf/riekki_physica_2008.pdf
  9. Nevalainen, K., Koponen, I.T., Size-selection of nanoclusters intransition from 2D to 3D growth in ion beam assisted deposition, Journal of Physics: Conference Series 100, 042027 (2008). https://doi.org/10.1088/1742-6596/100/4/042027
  10. Pirkkalainen, K., Riekki, K., and Koponen, I.T., Two computational methods for describing size selected nanocluster growth and obtaining accurate cluster size distributions, Computational Materials Science 43, 325-336 (2008). https://doi.org/10.1016/j.commatsci.2007.11.007
  11. Luo, K., Ala-Nissila, T., Ying, S. C., and Bhattacharya, A., Dynamics of DNA translocation through an attractive nanopore, Physical Review E 78, 061911:1-7 (2008). http://tfy.tkk.fi/~ala/pdf/Luo_pre_78_dynamics.pdf
  12. Luo, K., Ala-Nissila, T., Ying, S. C., and Bhattacharya, A., Sequence dependence of DNA translocation through a nanopore, Physical Review Letters 100, 058101 (2008). http://arxiv.org/abs/0711.3246
  13. Achim, C. V., Karttunen, M., Elder, K. R., Granato, E., Ala-Nissila, T. and Ying, S. C., Phase diagram of pinned lattices in the phase field crystal model, Journal of Physics: Conference Series 100, 072001 (2008). http://www.iop.org/EJ/toc/1742-6596/100/7
  14. Dias, C., Ala-Nissila, T., Karttunen, M., Vattulainen, I., and Grant, M., Microscopic Mechanism for Cold Denaturation, Physical Review Letters 100, 118101:1-4 (2008). http://link.aps.org/abstract/PRL/v100/e118101
  15. Jahma, Mika O., Koponen, Ismo T., and Ala-Nissila Tapio, Optimal conditions for submonolayer nanoisland growth in ion beam assisted deposition, 17TH INTERNATIONAL VACUUM CONGRESS (IVC-17), 13TH INTERNATIONAL CONFERENCE ON SURFACE SCIENCE, (ICSS-13) AND INTERNATIONAL CONFERENCE ON NANOSCIENCE AND TECHNOLOGY (ICN+T 2007), 2–6 July 2007, Stockholm, Sweden, Journal of Physics: Conference Series, pp. 072005 (2008).

2007 (10)

  1. Luo, K., Ala-Nissila, T., Ying, S.C., and Bhattacharya, A., Influence of polymer-pore interactions on translocation, Physical Review Letters 99, 148102 (2007). http://arxiv.org/pdf/0708.1147
  2. Jahma, M. O.,Koponen, I.T., and Ala-Nissila, T., Optimal conditions for submonolayer nanoisland growth in ion beam assisted deposition, Surface Science 601, 5628-5634 (2007). http://dx.doi.org/10.1016/j.susc.2007.09.037
  3. Huhtamäki, T., Jahma, M.O., and Koponen, I.T., A simple model for quantifying the degree of layer-by-layer growth in low energy ion deposition of thin films, Nuclear Instruments and Methods in Physics Research Section B 264, 55-60 (2007). http://dx.doi.org/10.1016/j.nimb.2007.08.073
  4. Lehtola, V., Punkkinen, O., and Ala-Nissilä, T., Polymer scaling and dynamics in steady-statesedimentation at infinite Peclet number, Physical Review E 76, 051802:1-7 (2007). http://link.aps.org/abstract/PRE/v76/e051802
  5. Nevalainen, K., Rusanen, M., Koponen, I.T., Size selected growth of nanodots: Effects of growth kinetics and energetics on the formation of stationary size distributions, European Physical Journal B No. 56, 311-322 (2007). http://tfy.tkk.fi/~ala/pdf/nevalainen_epj56_2007.pdf
  6. Rusanen, M., Koponen, I.T., Ala-Nissila, T., Reaction kinetic model of height selection in heteroepitaxial growth of quantum dots, European Physical Journal B 58, 405-409 (2007). http://tfy.tkk.fi/~ala/pdf/rusanen_epjb58_2007.pdf
  7. Luo, K., Ala-Nissila, T., Ying, S.C., and Bhattacharya, A., Heteropolymer translocation through nanopores, Journal of Chemical Physics 126, 145101 (2007). http://arxiv.org/pdf/cond-mat/0701522
  8. Masin, M., Vattulainen, I., Ala-Nissila, T., and Chvoj, Z., Interplay between steps and non-equilibrium effects in surface diffusion for a lattice-gas model of O/W(110), Journal of Chemical Physics 126, 114705 (2007). http://tfy.tkk.fi/~ala/pdf/masin_jcp126_2007.pdf
  9. Huopaniemi, I., Luo, K., Ala-Nissila, T., Ying, S.C., Polymer translocation through a nanopore under a pulling force, Physical Review E 75, 061912 (2007). http://arxiv.org/abs/cond-mat/0608499
  10. Nevalainen, K., Rusanen, M. and Koponen, I.T., Modelling size-selected growth of nanodots by using reaction kinetic approach, Materials Research Society Fall Meeting 2006, Boston, USA, November 27-December 1, 2006, Materials Research Society Symposium Proceedings Volume 959, 0959-M17-08 (2007).

2006 (12)

  1. Juergensen, V.W. and Jalkanen, K.J., The VA, VCD, Raman and ROA spectra of tri-L-serine in aqueous solution, Physical Biology 3, S63-S79 (2006). https://doi.org/10.1088/1478-3975/3/1/S07
  2. Rusanen, M., Kuhn, P., and Krug, J., Kinetic Monte Carlo Simulations of Oscillatory Shape Evolution for Electromigration-Driven Islands, Physical Review B 74, 245423 (2006). http://tfy.tkk.fi/~ala/pdf/marko_prb06.pdf
  3. Chvoj, Z., Masin, M., and Ala-Nissila, T., Theoretical Approaches to Collective Diffusion on Stepped Surfaces, Journal of Statistical Mechanics: Theory and Experiment No. 2006, P10003 (2006). http://tfy.tkk.fi/~ala/pdf/jstat6_10_p10003.pdf
  4. Luo, K., The morphology and dynamics of polymerization-induced phase separation, European Polymer Journal 42, 1499 (2006). http://tfy.tkk.fi/~ala/pdf/luo_epolymer06.pdf
  5. Huopaniemi, I., Luo K., Ala-Nissila, T., Ying S. C., Langevin Dynamics Simulations of Polymer Translocation through Nanopores, Journal of Chemical Physics 125, 124901 (2006). http://tfy.tkk.fi/~ala/pdf/langevin_translocation_jcp2006.pdf
  6. Karim, A., Al-Rawi, A.N., Kara, A, Rahman, T.S., Trushin, O and Ala-Nissilä, T.;, Diffusion of Small Two-Dimensional Cu Islands on Cu(111) studied with a kinetic Monte Carlo method, Physical Review B 73, 165411 (2006). http://tfy.tkk.fi/~ala/pdf/karim_prb_vol73_2006.pdf
  7. Karim, A., Al-Rawi, A.N., Kara, A., Rahman, T.S., and Ala-Nissila, T., Diffusion of two-dimensional Cu islands on Cu(111) studied with a kinetic Monte Carlo method, Physical Review B 73, 165411:1-11 (2006). http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PRBMDO000073000016165411000001&idtype=cvips&gifs=yes
  8. Achim, C.V., Karttunen, M., Elder, K.R., Granato, E., Ala-Nissila, T., Ying, S.C., Phase Diagram and Commensurate-Incommensurate Transitions in the Phase Field Crystal Model, Physical Review E 74, 021104 (2006). http://tfy.tkk.fi/~ala/pdf/achim_pre_2006.pdf
  9. Laurila T., Tong C., Majaniemi S., Ala-Nissila T., Interface Equations for Capillary Rise in Random Environment, Physical Review E 74, 041601 (2006). http://arxiv.org/abs/cond-mat/0601473
  10. Luo, K., Huopaniemi, I., Ala-Nissila, T., and Ying, S. C., Polymer translocation through a nanopore under an applied external field, Journal of Chemical Physics 124, 114707 (2006). http://tfy.tkk.fi/~ala/pdf/polymer_trans_jcp124_06.pdf
  11. Luo, K., Ala-Nissila, T., and Ying, S. C., Polymer translocation through a nanopore: a two-dimensional Monte Carlo study, Journal of Chemical Physics 124, 034714 (2006). http://tfy.tkk.fi/~ala/pdf/polymer_trans_jcp124_2006.pdf
  12. Masin, M., Vattulainen, I., Ala-Nissila, T. and Chvoj, Z., Computer simulation studies for collective adatom diffusion stepped surfaces, Focus in Surface Science Research No. 1, pp. 183-203 (2006). http://tfy.tkk.fi/~ala/pdf/step_review_focus_on_surface_science_research_ed_by_c_p_norris_nova_2006_pp_183-203.pdf

2005 (9)

  1. Jahma, M.O., Rusanen, M., Karim, A., Koponen, I.T., Ala-Nissila, T., and Rahman, T.S., Diffusion and submonolayer island growth during hyperthermaldeposition on Cu(100) and Cu(111), Surface Science 598, 246-252 (2005). http://dx.doi.org/10.1016/j.susc.2005.09.030
  2. Masin, M., Vattulainen, I., Ala-Nissila, T., and Chvoj, Z., Non-equilibrium effects in diffusion of interacting particles on vicinal surfaces, Journal of Chemical Physics 122, 214728 (2005). http://tfy.tkk.fi/~ala/pdf/masin_jcp122_2005.pdf
  3. Luo, K., Kuittu, M.P., Tong, C., Majaniemi, S., Ala-Nissila, T., Phase-field modeling of wetting on structured surface, Journal of Chemical Physics 123, pp. 194702 (2005). http://tfy.tkk.fi/~ala/pdf/JChemPhys_123_194702.pdf
  4. Laurila, T., Tong, C., Majaniemi, S., Huopaniemi, I, and Ala-Nissila, T., Dynamics and Kinetic Roughening of Interfaces in Two-Dimensional Forced Wetting, Eur.Phys.J.B 46, 553-561 (2005). http://arxiv.org/abs/cond-mat/0504721
  5. Frantz J., Jahma M. O., Nordlund K., and Koponen I. T., Low-energy deposition of Co onto Co islands on Ag(100): Effect on submonolayer growth, Physical Review B 71, 075411 (2005). http://link.aps.org/abstract/PRB/v71/e075411
  6. Jalkanen, J., Trushin, O., Granato, E., Ying, S.C., Ala-Nissila, T., Equilibrium shape and dislocation nucleation in strained epitaxial nanoislands, Physical Review B 72, 081403(R):1-4 (2005). http://prola.aps.org/abstract/PRB/v72/i8/e081403
  7. Lu, Y., Przybylski, M., Trushin, O., Wang, W.H., Barthel, J., Granato, E., Ying, S.C., and Ala-Nissila, T., Strain Relief in Cu-Pd Heteroepitaxy, Physical Review Letters 94, 146105:1-4 (2005). http://tfy.tkk.fi/~ala/pdf/lu_prl2005.pdf
  8. Ikonen, T.M.J. and Dumbrajs, O., Search for deterministic chaos in ELM time series of ASDEX upgrade tokamak, IEEE Transactions on Plasma Science 33, 1115-1122 (2005).
  9. Punkkinen, O., Falck, E., Vattulainen, I., and Ala-Nissila, T., Dynamics and Scaling of Polymers in a Dilute Solution: Analytical Treatment in Two and Higher Dimensions, Journal of Chemical Physics 122, 094904-1 094904-7 (2005). http://tfy.tkk.fi/~ala/pdf/punkkinen_jcp2005.pdf

2004 (10)

  1. Ala-Nissila, T., Majaniemi, S., and Elder, K., Phase-Field Modeling of Dynamical Interface Phenomena in Fluids, Lectures in Physics 640, pp. 357-388 (2004). http://tfy.tkk.fi/~ala/pdf/springer_book_final.pdf
  2. Chvoj, Z., Lahtinen, J.M., Ala-Nissila, T., Theory of collective diffusion in two-dimensional colloidal suspensions, J. Stat. Phys.: Theor. Exp. P11005, 1-8 (2004). http://www.fyslab.hut.fi/~ala/pdf/Modecoupling_JSTAT_2004.pdf
  3. Jahma M. O., Koponen I. T., and Rusanen M., Island size distributions in submonolayer growth in hyperthermal deposition, Surface Science 566-568, 170-174 (2004). http://dx.doi.org/10.1016/j.susc.2004.05.040
  4. Karim, A., Rusanen, M., Koponen, I.T., Ala-Nissila, T., Rahman, T. S., Fluctuations of surface steps in equilibrium: a kinetic Monte Carlo study, Surface Science 554, L113-L119 (2004). http://tfy.tkk.fi/~ala/pdf/karim_ssl04.pdf
  5. Koponen I. T., Jahma M. O., Rusanen M., and Ala-Nissila T., Submonolayer growth with anomalously high island density in hyperthermal deposition, Physical Review Letters 92, 086103 (2004). http://link.aps.org/abstract/PRL/v92/e086103
  6. Masin, M., Vattulainen, I., Ala-Nissila, T., and Chvoj, Z., Diffusion and mobility of interacting particles on stepped surfaces along the ledges, Surface Science 566-568P1, 143-147 (2004). http://tfy.tkk.fi/~ala/pdf/masin_ssl04.pdf
  7. Trushin, O.S., Salo, P., Ala-Nissila, T., and Ying, S.C., Searching for transition paths in multidimensional space with a fixed repulsive bias potential, Physical Review B 69, 033405 (4 pages) (2004).
  8. Kuusela, E., Lahtinen, J. M., and Ala-Nissila, T., Sedimentation dynamics of spherical particles in confined geometries, Physical Review E 69, 066310 (2004). http://tfy.tkk.fi/~ala/pdf/kuu_pre04.pdf
  9. Kuusela, E., Lahtinen, J.M., and Ala-Nissilä, T., Origin of Non-Gaussian Velocity Distributions in Steady-State Sedimentation, Europhysics letters 65, 13-19 (2004). http://tfy.tkk.fi/~ala/pdf/kuu03_epl.pdf
  10. Falck, E., Lahtinen, J. M., Vattulainen, I., and Ala-Nissila, T., Influence of hydrodynamics on many-particle diffusion in 2D colloidal suspensions, European Physical Journal E 13, 267-275 (2004). http://tfy.tkk.fi/~ala/pdf/falck_ejpb04.pdf

2003 (9)

  1. Rusanen, M., Koponen, I.T., and Asikainen, J., Island growth in submonolayer deposition with aggregation and fragmentation, European Physical Journal B 36, 567 (2003).
  2. Cai, L., Zheng, C., Man, K.L., Altman, M.S., Granato, E., Ala-Nissila, T., Ying, S.C., and Xiao, X., Study of the Step Effects Near a Reconstructive Phase Transition: H on W(100), Physical Review B 68, 075422 (2003). http://tfy.tkk.fi/~ala/pdf/cai_prb03.pdf
  3. Trushin, O., Granato, E., Ying, S.C., Salo, P., and Ala-Nissila, T., Energetics and atomic mechanisms of dislocation nucleation in strained epitaxial layers, Physical Review B 68, 155413 (8 pages) (2003).
  4. Masin, M., Vattulainen, I., Ala-Nissila, T., Chvoj, Z., Diffusion and mobility of interacting particles on stepped surfaces, Surface Science 544, L703-L708 (2003). http://tfy.tkk.fi/~ala/pdf/mas03_ssl.pdf
  5. Badescu, S.C., Jacobi, K., Wang, Y., Bedurftig, K., Ertl, G., Salo, P., Ala-Nissila, T., and Ying, S.C., Vibrational states of H monolayer on the Pt(111) surface, Physical Review B 68, 205401 (2003).
  6. Falck E., Punkkinen O., Vattulainen I., and Ala-Nissila T., Dynamics and Scaling of Two-Dimensional Polymers in a Dilute Solution, Physical Review E Rapid Comm. 68, 050102(R) (2003). http://tfy.tkk.fi/~ala/pdf/fal_pre03.pdf
  7. Masin M., Vattulainen I., Ala-Nissila T., Chvoj Z., Non-equilibrium effects in profile spreading on stepped surfaces, Surface Science 529/3, L256-L262 (2003). http://tfy.tkk.fi/~ala/pdf/masin_ssl03.pdf
  8. Rusanen, Marko, Koponen, Ismo T., and Kallunki, Jouni, Mixing length scales: step meandering and island nucleation on vicinal surfaces, Eur. Phys. J. B 36, 141-147 (2003). http://www.edpsciences.org/articles/epjb/abs/2003/21/b03179/b03179.html
  9. Kuusela, E., Lahtinen, J.M., and Ala-Nissilä, T., Collective effects in settling of spheroids under steady-state sedimentation, Physical Review Letters 90, 094502 (2003). http://tfy.tkk.fi/~ala/pdf/kuu03_prl.pdf

2002 (19)

  1. Asikainen, J., Majaniemi, S., Dube, M., Heinonen, J., and Ala-Nissila, T., Dynamical scaling and kinetic roughening of single valued fronts propagating in fractal media, European Physical Journal B 30, 256-263 (2002). http://tfy.tkk.fi/~ala/pdf/epjb30.pdf
  2. Nikunen, P., Vattulainen, I., and Ala-Nissila, T., Effect of Quenched Impurities on Surface Diffusion, Spreading and Ordering of O/W(110), Journal of Chemical Physics 117, 6757 (2002). http://tfy.tkk.fi/~ala/pdf/jcp117.pdf
  3. Várkonyi, G., Hanski, I., Rost, M., and Itämies, J., Host-parasitoid dynamics in periodic boreal moths, OIKOS 98, 421 (2002).
  4. Trushin, O., Granato, E., Ying, S.C., Kosterlitz, J.M., Ala-Nissila, T., and Salo, P., Surface instability and dislocation nucleation in strained epitaxial layers, Brazilian Journal of Physics 32, 369-371 (2002).
  5. Chen, L. Y., Ying, S. C., Ala-Nissila, T., Finding Transition Paths and Rate Coefficients Through Accelerated Langevin Dynamics, Physical Review E 65, 042101:1-4 (2002). http://tfy.tkk.fi/~ala/pdf/042101.pdf
  6. Asikainen, J., Heinonen, J., and Ala-Nissila T., Exact and efficient discrete random walk method for time-dependent environments, Phys. Rev. E 66, 066706 (2002). http://tfy.tkk.fi/~ala/pdf/066706.pdf
  7. Trushin, O., Granato, E., Ying, S.C., Salo, P., and Ala-Nissila, T., Minimum energy paths for dislocation nucleation in strained epitaxial layers, Physical Review B 65, 241408(R)-1-4 (2002).
  8. Trushin, O., Granato, E., Ying, S.C., Salo, P., Ala-Nissila, T., Mechanisms of dislocation nucleation in strained epitaxial layers, Physica Status Solidi B 232, 100-105 (2002). http://tfy.tkk.fi/~ala/pdf/pss232.pdf
  9. Masin, M., Chvoj, Z., Jelinek, P. and Heinonen, J., Monte-Carlo simulation of diffusion in a two barriers system, Surface Science 516, 169-178 (2002). http://tfy.tkk.fi/~ala/pdf/surfsci516.pdf
  10. Cai, L., Altman, M. S., Granato, E., Ala-Nissila, T., Ying, S. C., and Xiao, X., Surface Diffusion Anomaly Near Substrate Phase Transition: H on W(100), Physical Review Letters 88, 226105:1-4 (2002). http://tfy.tkk.fi/~ala/pdf/226105.pdf
  11. Asikainen, J., Majaniemi, S., Dube, M., and Ala-Nissila, T., Kinetic roughening and interface dynamics in fractals, Physical Review E 65, 052104 (2002).
  12. Fordell, T., Salo, P., and Alatalo, M., Self-diffusion on fcc(100) metal surfaces: Comparison of different approximations, Physical Review B 65, 233408-1-4 (2002).
  13. Lahtinen, J.M., Masin, M., Laurila, T., Ala-Nissilä, T., and Chvoj, Z., Many-particle diffusion in continuum: Inluence of a periodic surface potential, Journal of Chemical Physics 116, 7666 (2002). http://tfy.tkk.fi/~ala/pdf/jcp116.pdf
  14. Asikainen, J., Majaniemi, S., Dube, M., and Ala-Nissila, T., Interface dynamics and kinetic roughening in fractals, Physical Review E 65, 052104 (2002). http://tfy.tkk.fi/~ala/pdf/052104.pdf
  15. Rusanen, M., Koponen, I. T., Ala-Nissila, T., Ghosh, C., and Rahman, T. S., Morphology of ledge patterns during step flow growth of metal surfaces vicinal to fcc(001), Physical Review B 65, 041404 (2002). http://xxx.lanl.gov/abs/cond-mat/0110014
  16. Badescu, S.C., Salo, P., Ala-Nissila, T., Ying, S.C., Jacobi, K., Wang, Y., Bedurftig, K., Ertl, G., Energetics and Vibrational States for Hydrogen on Pt(111), Physical Review Letters 88, 136101-1-136101-4 (2002).
  17. Ala-Nissila, T., Ferrando, R., and Ying, S.C., Collective and Single Particle Diffusion on Surfaces, Advances in Physics 51, 949-1078 (2002). http://tfy.tkk.fi/~ala/pdf/diffu_review2002.pdf
  18. Rusanen, M., Koponen, I.T., and Ala-Nissila, T., Meandering instability of curved step edges on growth of a crystalline cone, Surface Science 507-510, pp. 305-310 (2002). http://xxx.lanl.gov/abs/cond-mat/0107592
  19. Heinonen, J., Koponen, I.T., Salo, P., Ala-Nissila, T., Time correlations and statistics of atomistic processes in island diffusion on fcc(100) metal surfaces, Surface Science 507-510, 146-149 (2002).

2001 (18)

  1. Lahtinen, J. M., Hjelt, T., Ala-Nissila, T., and Chvoj, Z., Diffusion of hard disks and rodlike molecules on surfaces, Physical Review E 64, 021204 (2001). http://tfy.tkk.fi/~ala/pdf/021204.pdf
  2. Hjelt, T., Vattulainen, I., Lahtinen J. M., Ala-Nissila T., and Ying S.-C., How to measure velocity correlations from surface diffusion experiments by STM, Surface Science 482-485, 381-385 (2001). http://tfy.tkk.fi/~ala/pdf/surfsci482.pdf
  3. Rost, M., Varkonyi, G., and Hanski, I., Patterns of two-year population cycles in spatially extended host-parasitoid systems, Population Biology 59, pp. 223-233 (2001). http://tfy.tkk.fi/~ala/pdf/tpb59.pdf
  4. Kuusela, E., Höfler, K., and Schwarzer, S., Computation of Particle Speed and Orientation Distribution in Suspensions of Prolate Spheroids, Engineering Mathematics 41, 221 (2001). http://doi.org/10.1023/A:1011900103361
  5. Dube, M., Majaniemi, S., Rost, M., Alava, M.J., Elder, K.R., Ala-Nissila, T., Interface pinning in spontaneous imbibition, Physical Review E 64, 051605:1-6 (2001). http://doi.org/10.1103/PhysRevE.64.051605
  6. Dube, M., Rost, M., Elder, K. E., Alava, M., Majaniemi, S., Ala-Nissila, T., Comment on "Pipe Network Model for Scaling of Dynamic Interfaces in Porous Media", Physical Review Letters 86, 6046 (2001). http://tfy.tkk.fi/~ala/pdf/p6046_1.pdf
  7. Badescu, S., Ying, S.-C., and Ala-Nissila, T., Quantum Diffusion of H/Ni(111) through Monte Carlo Wave Function Formalism, Physical Review Letters 86, 5092-5096 (2001). http://tfy.tkk.fi/~ala/pdf/p5092_1.pdf
  8. Myllys, M., Maunuksela, J., Alava, M., Ala-Nissila, T., Merikoski, J., and Timonen, J., Kinetic Roughening in Slow Combustion of Paper, Physical Review E 64, 036101-1-12 (2001). http://tfy.tkk.fi/~ala/pdf/036101.pdf
  9. Nikunen, P., Vattulainen, I., and Ala-Nissila, T., Density Profile Evolution and Nonequilibrium Effects in Partial and Full Spreading Measurements of Surface Diffusion, Journal of Chemical Physics 114, 6335-6345 (2001). http://tfy.tkk.fi/~ala/pdf/jcp114.pdf
  10. Kuusela, E., and Ala-Nissila T., Velocity correlations and diffusion during sedimentation, Pysical Review E 63, pp. 061505 (2001). http://tfy.tkk.fi/~ala/pdf/061505.pdf
  11. Kuusela, E., Hoefler, K., and Schwarzer, S., Simulation of settling speed and orientation distribution insuspensions of prolate spheroids, Journal of Engineering Mathematics 41, 221-235 (2001). htto://doi.org/10.1023/A:1011900103361
  12. Salo, P., Hirvonen, J., Koponen, I. T., Trushin, O. S., Heinonen, J., and Ala-Nissila, T., Role of concerted atomic movements on the diffusion of small islands on fcc(100) metal surfaces, Physical Review B 64, 161405-1-161405-4 (2001).
  13. Rusanen, M., Koponen, I. T., Heinonen, J., and Ala-Nissila, T., Instability and wavelength selection during step flow growth of metal surfaces vicinal to fcc(001), Physical Review Letters 86, pp. 5317-5320 (2001). http://tfy.tkk.fi/~ala/pdf/p5317_1.pdf
  14. Falck, E., Ala-Nissila, T., Granato, E., and Ying, S.-C., Dynamic Scaling in c(2 x 2) Reconstruction on W(001), Surface Science 482-485, 413-417 (2001). http://tfy.tkk.fi/~ala/pdf/surfsci482_2.pdf
  15. Trushin, O. S., Salo, P., Alatalo, M., and Ala-Nissila, T., Atomic mechanisms of cluster diffusion on metal fcc(100) surfaces, Surface Science 482-485, pp. 365-369 (2001).
  16. Ying, S. C., Granato, E., and Ala-Nissila, T., Nonlinear Diffusion and Sliding Friction, Collective Diffusion on Surfaces: Correlation Effects andAdatom Interactions, Prague, October 2000, Collective Diffusion on Surfaces: Correlation Effects andAdatom Interactions, 273-283 (2001).
  17. Hjelt, T., Kuusela, E., Lahtinen, J. M., Ala-Nissila, T., Vattulainen, I., and Ying, S. C., Memory Effects and Memory Functions in Surface Diffusion, the NATO Advanced Research Workshop on Collective Diffusion on Surfaces: Correlation Effects and Adatom Interactions, Prague, Czech Republic, 2-6 October 2000, Collective Diffusion on Surfaces: Correlation Effects and Adatom Interactions, 47-57 (2001).
  18. Trushin, O.S., Hirvonen, J., Heinonen, J., Salo, P., Alatalo, M., Ala-Nissila, T., Koponen, I., and Merikoski, J., Adatom island diffusion on metal fcc(100) surfaces, Collective Diffusion on Surfaces: Correlation Effects and Adatom Interactions, Prague, October 2000, Collective Diffusion on Surfaces: Correlation Effects and Adatom Interactions, pp. 317-325 (2001).